Showing posts with label open science. Show all posts
Showing posts with label open science. Show all posts

15 February 2023

Incoming: Spare Slots for Freelance Work in 2023


I will soon have spare slots in my freelance writing schedule for regular weekly or monthly work, and major projects. Here are the main areas that I've been covering, some for nearly three decades. Any commissioning editors interested in talking about them or related subjects, please contact me at glyn.moody@gmail.com. I am also available to speak on these topics at relevant conferences around in the world, something I have done many times in the past. 

Privacy, Surveillance, Encryption, Freedom of Speech 

Over the last decade, I have written hundreds of articles about these crucial areas, for Techdirt, Privacy News Online, and Ars Technica. Given the increasing challenges facing society in these areas, they will remain an important focus for my work in the future. 

Copyright

I have also written many hundreds of articles about copyright. These have been mainly for Techdirt, where I have published nearly 1,900 posts, CopyBuzz, and Walled Culture. Most recently, I have written a 300-page book, also called Walled Culture, detailing the history of digital copyright, its huge problems, and possible solutions. Free ebook versions of its text are available

EU Tech Policy and EU Trade Agreements: DSA, DMA, TTIP, CETA 

I have written about EU tech policy for CopyBuzz, focussing on the EU Copyright Directive, and for Privacy News Online, dealing with major initiatives such as the Digital Services Act, the Digital Markets Act, and the Artificial Intelligence Act. Another major focus of my writing has been so-called "trade agreements" like TTIP, CETA, TPP and TISA. "So-called", because they go far beyond traditional discussions of tariffs, and have major implications for many areas normally subject to democratic decision making, notably tech policy. In addition to 51 TTIP Updates that I originally wrote for Computerworld UK. I have covered this area extensively for Techdirt and Ars Technica, including a major feature on TTIP for the latter. 

Free Software/Open Source

I started covering this topic in 1995, wrote the first mainstream article on Linux for Wired in 1997, and the first (and still only) detailed history of the subject, Rebel Code: Linux and the Open Source Revolution in 2001, for which I interviewed the world’s top 50 hackers at length. 

Open Access, Open Data, Open Science, Open Government, Open Everything 

As the ideas underlying openness, sharing and online collaboration have spread, so has my coverage of them, particularly for Techdirt. I wrote one of the most detailed histories of Open Access, for Ars Technica, and its history and problems also form Chapter 3 of my book Walled Culture, mentioned above. 

Europe 

As a glance at some of my 580,000 (sic) posts to Twitter, and 18,000 posts on Mastodon, will indicate, I read news sources in a number of languages (Italian, German, French, Russian, Spanish, Portuguese, and Georgian in descending order of capability.) This means I can offer a fully European perspective on any of the topics above - something that may be of interest to publications wishing to provide global coverage that goes beyond purely anglophone reporting. The 25,000 or so followers that I have across these social networks also means that I can push out links to my articles, something that I do as a matter of course to boost their readership and encourage engagement. 


London 2023

08 January 2018

Incoming: Spare Slots for Freelance Work in 2018


I will soon have spare slots in my freelance writing schedule for regular weekly or monthly work, and major projects. Here are the main areas that I've been covering, some for more than two decades. Any commissioning editors interested in talking about them or related subjects, please contact me at glyn.moody@gmail.com (PGP available).  I am also available to speak on these topics at relevant conferences.

Surveillance, Encryption, Privacy, Freedom of Speech

For the last two years, I have written hundreds of articles about these crucial areas, for Ars Technica UK (http://arstechnica.co.uk/author/glyn_moody/), Privacy News Online (https://www.privateinternetaccess.com/blog/author/glynmoody/) and Techdirt (https://www.techdirt.com/user/glynmoody). Given the challenges facing society this year, they are likely to be an important focus for my work in 2018.

China

Another major focus for me this year will be China. I follow the world of Chinese IT closely, and have written numerous articles on the topic. Since I can read sources in the original, I am able to spot trends early and to report faithfully on what are arguably some of the most important developments happening in the digital world today.

Free Software/Open Source

I started covering this topic in 1995, wrote the first mainstream article on Linux for Wired in 1997 (https://www.wired.com/1997/08/linux-5/), and the first (and still only) detailed history of the subject, Rebel Code (https://en.wikipedia.org/wiki/Rebel_Code) in 2001, where I interviewed the top 50 hackers at length. I have also written about the open source coders and companies that have risen to prominence in the last decade and a half, principally in my Open Enterprise column for Computerworld UK, which ran from 2008 to 2015.

Open Access, Open Data, Open Science, Open Government, Open Everything

As the ideas underlying openness, sharing and online collaboration have spread, so has my coverage of them. I wrote one of the most detailed histories of Open Access, for Ars Technica (http://arstechnica.com/science/2016/06/what-is-open-access-free-sharing-of-all-human-knowledge/).

Copyright, Patents, Trade Secrets

The greatest threat to openness is its converse: intellectual monopolies, which prevent sharing. This fact has led me to write many articles about copyright, patents and trade secrets. These have been mainly for Techdirt, where I have published over 1,500 posts, and also include an in-depth feature on the future of copyright for Ars Technica (http://arstechnica.co.uk/tech-policy/2015/07/copyright-reform-for-the-digital-age/).

Trade Agreements - TTIP, CETA, TISA, TPP

Another major focus of my writing has been so-called "trade agreements" like TTIP, CETA, TPP and TISA. "So-called", because they go far beyond traditional discussions of tariffs, and have major implications for many areas normally subject to democratic decision making. In addition to 51 TTIP Updates that I originally wrote for Computerworld UK (http://opendotdotdot.blogspot.nl/2016/01/the-rise-and-fall-of-ttip-as-told-in-51.html), I have covered this area extensively for Techdirt and Ars Technica UK, including a major feature on TTIP (http://arstechnica.co.uk/tech-policy/2015/05/ttip-explained-the-secretive-us-eu-treaty-that-undermines-democracy/) for the latter.

Europe

As a glance at some of my 318,000 (sic) posts to Twitter, identi.ca and Google+ will indicate, I read news sources in a number of languages (Italian, German, French, Spanish, Russian, Portuguese, Dutch, Greek, Swedish in descending order of capability.) This means I can offer a fully European perspective on any of the topics above - something that may be of interest to publications wishing to provide global coverage that goes beyond purely anglophone reporting. The 30,000 or so followers that I have across these social networks also means that I can push out links to my articles, something that I do as a matter of course to boost their readership.

10 June 2012

Beyond Open Access: Open Source Scientific Software

Although the traditional image of a science laboratory typically consists of a room full of test tubes or microscopes, the reality is that computers now play a central role there, just as they do for business and life in general. 

On Techdirt.

08 December 2011

From Open Source to Open Research: Horizon 2020

Last week I took part in a meeting at the European Parliament entitled “Horizon 2020: Investing in the common good”. Here's the background:

On Open Enterprise blog.

19 November 2011

Learning From Beethoven: Speeding Up The Exchange Of Scientific Knowledge

There is a general belief that science proceeds by smooth cycles of discovery and sharing – that scientists formulate theories, investigate problems, produce data and then publish results for other scientists to check, reproduce and then build on. 

On Techdirt.

27 October 2011

Open Source, Open Science, Open Source Science

One of the key inspirations for the free software movement was the scientific tradition of sharing information and building on the work of others. That arose a few hundred years ago, at a time of rapid scientific progress:

On The H Open.

25 January 2011

Open Source and Open Research Computation

Free software was inspired in part by the scientific method, but it is only now that science is starting to apply free software's key insights. For example, opening up the source code would imply that scientific papers should be made freely available for anyone to read and use. And yet it is only in the last few years that this open access approach, as it is called, has made significant headway against the prevailing proprietary system, which says that you have to pay - often handsomely - if you want to read a paper.

On Open Enterprise blog.

20 June 2010

Open Source Scientific Publishing

Since one of the key ideas behind this blog is to explore the application of the open source approach to other fields, I was naturally rather pleased to come across the following:

As a software engineer who works on open source scientific applications and frameworks, when I look at this, I scratch my head and wonder "why don't they just do the equivalent of a code review"? And that's really, where the germ of the idea behind this blog posting started. What if the scientific publishing process were more like an open source project? How would the need for peer-review be balanced with the need to publish? Who should bear the costs? Can a publishing model be created that minimizes bias and allows good ideas to emerge in the face of scientific groupthink?

It's a great question, and the post goes some way to sketching out how that might work in practice. It also dovetails nicely with my earlier post about whether we need traditional peer review anymore. Well worth reading.

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14 June 2010

Abundance Obsoletes Peer Review, so Drop It

Recently, I had the pleasure of finally meeting Cameron Neylon, probably the leading - and certainly most articulate - exponent of open science. Talking with him about the formal peer review process typically employed by academic journals helped crystallise something that I have been trying to articulate: why peer review should go.

A recent blog post has drawn some attention to the cost - to academics - of running the peer review process:

So that's over £200million a year that academics are donating of their time to the peer review process. This isn't a large sum when set against things like the budget deficit, but it's not inconsiderable. And it's fine if one views it as generating public good - this is what researchers need to do in order to conduct proper research. But an alternative view is that academics (and ultimately taxpayers) are subsidising the academic publishing to the tune of £200 million a year. That's a lot of unpaid labour.

Indeed, an earlier estimate put the figure even higher:

a new report has attempted to quantify in cash terms exactly what peer reviewers are missing out on. It puts the worldwide unpaid cost of peer review at £1.9 billion a year, and estimates that the UK is among the most altruistic of nations, racking up the equivalent in unpaid time of £165 million a year.

Whatever the figure, it is significant, which brings us on to the inevitable questions: why are researchers making this donation to publishers, and do they need to?

The thought I had listening to Neylon talk about peer review is that it is yet another case of a system that was originally founded to cope with scarcity - in this case of outlets for academic papers. Peer review was worth the cost of people's time because opportunities to publish were rare and valuable and needed husbanding carefully.

Today, of course, that's not the case. There is little danger that important papers won't see the light of day: the nearly costless publishing medium of the Internet has seen to that. Now the problem is dealing with the fruits of that publishing abundance - making such that people can find the really important and interesting results among the many out there.

But that doesn't require peer review of the kind currently employed: there are all kinds of systems that allow any scientist - or even the general public - to rate content and to vote it up towards a wider audience. It's not perfect, but by and large it works - and spreads the cost widely to the point of being negligible for individual contributors.

For me what's particularly interesting is the fact that peer review is unnecessary for the same reason that copyright and patents are unnecessary nowadays: because the Internet liberates creativity massively and provides a means for bringing that flood to a wider audience without the need for official gatekeepers to bless and control it.

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10 March 2010

Open Science vs. Closed Companies

Here are some interesting thoughts on open science and how it relates to those working within companies:

Just as secrecy in academia only makes sense within the existing reward structure, secrecy in industry could be at least partly offset by policy decisions that recognize the gains in efficiency that collaboration can bring. I've heard multiple times from multiple sources that industry may close itself off from the rest of the world, but within a company, the teamwork ethic is amazing. Clearly, the value of co-operation is recognized. Why shouldn't that also work for (larger and larger) groups of companies? What you lose by not being the only company to know something from which profit can be made (call it X) is offset by the fact that you might never have learned X without the collaboration -- and in the meantime, the world gets X that much faster.

It seems clear, though, that such top-down decisions are more likely to be made in academia, and perhaps the nonprofit sector, than in profit-driven industry -- at least until there are enough concrete examples of success to tip the perceived balance of risk. If I'm -- if we Open Foo types are -- right, it's actually riskier to compete than to cooperate in the long term. Better to own a share of X sooner than to delay any return on your investment in the hope of owning X outright later. This is especially true when the resources required to try to own X could be used to get you shares in multiple other projects at the same time.

Sharing should not be seen as a problem but as a solution.

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09 March 2010

Open Science vs. Intellectual Monopolies

Here's a key section from the new Royal Society report "The scientific century: securing our future prosperity":

Science thrives on openness - the free exchange of idea, knowledge and data. Changes to the way that information is shared are already accelerating developments in certain disciplines and creating new approaches to research. This openness can create a tension with the need to capture and exploit intellectual property. But it also presents an opportunity for scientific collaboration and innovation.

Well, maybe it creates a tension because intellectual monopolies are fundamentally antithetical to science and knowledge. Maybe the scientific community needs to realise this, and ought to refuse to compromise on its basic tenets of sharing knowledge for the greater good, not least because the shift from analogue to digital is magnifying their importance. Maybe the report should have been less pusillanimous in this respect. And maybe, because it wasn't, it will be yet another case of words, words, words...

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19 February 2010

Open Data: A Question of (Panton) Principles

Since I have been banging on about the need for open data in science for some time, you won't be surprised to learn that I am in agreement with the following:


Science is based on building on, reusing and openly criticising the published body of scientific knowledge.

For science to effectively function, and for society to reap the full benefits from scientific endeavours, it is crucial that science data be made open.

By open data in science we mean that it is freely available on the public internet permitting any user to download, copy, analyse, re-process, pass them to software or use them for any other purpose without financial, legal, or technical barriers other than those inseparable from gaining access to the internet itself. To this end data related to published science should be explicitly placed in the public domain.


They form the basis of the newly-formalised Panton Principles for open data in science, and are followed by the four short principles themselves - essentially that there should be an explicit statement of what may be done with the data, and that ideally that data should bein the public domain.

The principles derive their name from the Panton Arms on Panton Street in Cambridge - destined, perhaps, to pass into science history rather as the Eagle pub did 50 years ago.

But given that provenance, and the fact that 75% of the authors of the Principles are British, it's a shame they couldn't spell the word "licence" properly. Sorry for the nit-picking, but it's a question of, er, principle for me...

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09 February 2010

Of Open Science and Open Source

Now here's an idea:

Computer code is also at the heart of a scientific issue. One of the key features of science is deniability: if you erect a theory and someone produces evidence that it is wrong, then it falls. This is how science works: by openness, by publishing minute details of an experiment, some mathematical equations or a simulation; by doing this you embrace deniability. This does not seem to have happened in climate research. Many researchers have refused to release their computer programs — even though they are still in existence and not subject to commercial agreements. An example is Professor Mann's initial refusal to give up the code that was used to construct the 1999 "hockey stick" model that demonstrated that human-made global warming is a unique artefact of the last few decades. (He did finally release it in 2005.)

Quite.

So, if you are publishing research articles that use computer programs, if you want to claim that you are engaging in science, the programs are in your possession and you will not release them then I would not regard you as a scientist; I would also regard any papers based on the software as null and void.

I'd go further: if you won't release them and *share* them, then you're not really a scientist, because science is inherently about sharing, not hoarding knowledge, whatever kind that may be. The fact that some of it may be in the form of computer code is a reflection of the fact that research is increasingly resting on digital foundations, nothing more.

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24 November 2009

Promoting Open Source Science

Open source science certainly seems to be catching on lately: there have been as many articles on the subject in the last few months as in the prevous few years. Here's a good one, an interview with Walter Jessen. This is his definition of what open source science means:

Open Source Science is a collaborative and transparent approach to science. To me, it means four things:

1. Open Source: the use of open and freely accessible software tools for scientific research and collaboration.
2. Open Notebook: transparency in experimental design and data management.
3. Open Data: public accessibility of scientific data, which allows for distribution, reuse and derived works.
4. Open Access: public access to scholarly literature.

It's well-worth reading, not least for its useful links to related sites.

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23 November 2009

Of Credibility, Openness and Scientific Tribalism

I've steered clear of the Climate Research Unit (CRU) break-in since emotions are still running high, while information content remains low. But aside from the significance (or otherwise) of the emails, one thing is abundantly clear: if the climate data had been released from the beginning, this would really be a story of negligible interest to the wider world.

Here's an insightful post that explores not only that issue of openness, but also an extremely important factor I'd not really appreciated sufficiently before: scientific tribalism.

Tribalism is defined here as a strong identity that separates one’s group from members of another group, characterized by strong in-group loyalty and regarding other groups differing from the tribe’s defining characteristics as inferior. In the context of scientific research, tribes differ from groups of colleagues that collaborate and otherwise associate with each other professionally. As a result of the politicization of climate science, climate tribes (consisting of a small number of climate researchers) were established in response to the politically motivated climate disinformation machine that was associated with e.g. ExxonMobil, CEI, Inhofe/Morano etc. The reaction of the climate tribes to the political assault has been to circle the wagons and point the guns outward in an attempt to discredit misinformation from politicized advocacy groups. The motivation of scientists in the pro AGW tribes appears to be less about politics and more about professional ego and scientific integrity as their research was under assault for nonscientific reasons (I’m sure there are individual exceptions, but this is my overall perception).

...

Scientists are of course human, and short-term emotional responses to attacks and adversity are to be expected, but I am particularly concerned by this apparent systematic and continuing behavior from scientists that hold editorial positions, serve on important boards and committees and participate in the major assessment reports. It is these issues revealed in the HADCRU emails that concern me the most, and it seems difficult to spin many of the emails related to FOIA, peer review, and the assessment process. I sincerely hope that these emails do not in actuality reflect what they appear to, and I encourage Gavin Schmidt et al. to continue explaining the individual emails and the broader issues of concern.

This analysis exposes the worrying possibility that the fractures within the scientific community can be further exploited by those who wish to see climate change science damaged and the necessary measures it calls for delayed or even dismissed.

It looks like the greatest enemy to climate change science comes not from the denialists - be they fools or knaves - but from narrow-minded tribalists within the scientific community itself who cannot see the bigger picture. Perhaps we should be grateful for the ugly fissures that the CRU incident seems to reveal, since it gives the people concerned a chance to heal them before they lead to irreversible fractures.

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22 November 2009

Opening up the Black Box of Scientific Research

I've written before about the idea of applying openness/open source ideas to science, but here's an interesting new project that attempts to go much further:

our fundamental goal is to render transparent the black-box of scientific research by affording all individuals an opportunity to both access and participate directly in the scientific research process. To achieve this goal, we are working toward developing an entirely research-based scientific curriculum, and three additional resources (the discussion forum, research microfinance platform, and research log platform) which shall function to dynamically feed information to this curriculum - thereby ensuring the accuracy of the information contained within it, and its ability to maintain par with the course of scientific research.

In addition, each of these resources will also serve to increase the accessibility of the scientific research process for non-researchers by allowing individuals to (1) directly invest in research projects (via the research microfinance platform), (2) pose questions directly to researchers working at the cutting edge of scientific research (via the discussion forum), and (3) observe the progress of ongoing publicly-funded research (via the research log platform).

Not quite sure how this will scale, but anything whose "fundamental goal" is "to render transparent the black-box of scientific research" sounds good to me.

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08 September 2009

The Open Dinosaur Project

Now this is what I call open science:

Hello, and thanks for dropping by at the Open Dinosaur Project. This blog is part of a wider project, in which we hope — with your help — to make some science. We want to put together a paper on the multiple independent transitions from bipedality to quadrupedality in ornithischians, and we want to involve everyone who’s interested in helping out. We’ll get to the details later, but the basic idea is to amass a huge database of measurements of the limb bones of ornithischian dinosaurs, to which we can apply various statistical techniques. Hopefully we’ll figure out how these transitions happened — for example, whether ceratopsians, thyreophorans and ornithopods all made it in the same way or differently.

Who are “we”, I hear you ask. The core ODP team is Andy Farke (curator at the Raymond M. Alf Museum of Paleontology, Claremont, California), Matt Wedel (Western University of Health Sciences, Pomona, California) and Mike Taylor (University College London). We’re all researching and publishing scientists, specialising in dinosaurs — although up until now Matt and Mike have concentrated on sauropods.

As for who you are: if you care about dinosaurs, and want to make some science, then you can be involved. It doesn’t matter whether you’re a seasoned professional palaeontologist, a high-school kid or a retired used-car salesman: so long as you can conduct yourself like a professional, you’re welcome here.

And beyond this great idea, there's lots of practical stuff on the site about how it will done: this will clearly carry over to other projects, which makes it well worth studying for those contemplating similar collaborative open science projects. (Via @BoraZ.)

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29 July 2009

It's Not Open Science if it's Not Open Source

Great to see a scientist come out with this in an interesting post entitled "What, exactly, is Open Science?":


granting access to source code is really equivalent to publishing your methodology when the kind of science you do involves numerical experiments. I’m an extremist on this point, because without access to the source for the programs we use, we rely on faith in the coding abilities of other people to carry out our numerical experiments. In some extreme cases (i.e. when simulation codes or parameter files are proprietary or are hidden by their owners), numerical experimentation isn’t even science. A “secret” experimental design doesn’t give skeptics the ability to repeat (and hopefully verify) your experiment, and the same is true with numerical experiments. Science has to be “verifiable in practice” as well as “verifiable in principle”.

The rest is well worth reading too.

(Via @phylogenomics.)

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03 July 2009

The Engine of Scientific Progress: Sharing

Here's a post saying pretty much what I've been saying, but in a rather different way:


Here we present a simple model of one of the most basic uses of results, namely as the engine of scientific progress. Research results are more than just accumulated knowledge. Research results make possible new questions, which in turn lead to even more knowledge. The resulting pattern of exponential growth in knowledge is called an issue tree. It shows how individual results can have a value far beyond themselves, because they are shared and lead to research by others.


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22 June 2009

Open Source Dendrochronology

How could I resist this story? Aside from the great headline, it's about old-style closed-source science being challenge by open science, with open data - the only kind, if you think about it:


Dendrochronology is the study of tree-rings to determine when and where a tree has grown. Everybody knows that trees produce one ring every year. But the rings also vary in width according to each year's local weather conditions. If you've got enough rings in a wood sample, then their widths form a unique "bar code". Collect enough samples of various ages from buildings and bog wood, and you can join the bar codes up to a reference curve covering thousands of years.

Dendrochronology has a serious organisational problem that impedes its development as a scientific discipline and tends to compromise its results. This is the problem of proprietary data. When a person or organisation has made a reference curve, then in many cases they will not publish it. They will keep it as an in-house trade secret and offer their paid services as dendrochronologists. This means that dendrochronology becomes a black box into which customers stick samples, and out of which dates come, but only the owner of the black box can evaluate the process going on inside. This is of course a deeply unscientific state of things. And regardless of the scientific issue, I am one of those who feel that if dendro reference curves are produced with public funding, then they should be published on-line as a public resource.

But there is a resistance movement: amateur dendrochronologists such as my buddies Torbjörn Axelsson and Åke Larsson. They practice open source data transparency on the net, which means that arguably amateur dendrochronology is at this time more scientific than the professional variety.

I think it's also interesting because the story shows that, even in specialised areas like dendrochronology, openness makes a big difference to how the science is conducted - and how reliable its results are. (Via @BoraZ.)

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